MmuEX0053739 @ mm9
Exon Skipping
Gene
ENSMUSG00000045466 | Zfp956
Description
zinc finger protein 956 [Source:MGI Symbol;Acc:MGI:2141515]
Coordinates
chr6:47905816-47912631:+
Coord C1 exon
chr6:47905816-47906169
Coord A exon
chr6:47907475-47907601
Coord C2 exon
chr6:47912524-47912631
Length
127 bp
Sequences
Splice sites
3' ss Seq
GGGGACTTGTATTCCTCCAGGTT
3' ss Score
6.57
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
Exon sequences
Seq C1 exon
GACTGGCATATGGGGACTGACCTCCAACAACAGACCCAGATCCAGTCTGCAGAGATCTCCCTTCTAGCTATCCTATCTGCTGTTCAGGCAGTGGAAAAGAAAACAGAGTCCCAGGCTGTCCACCTTCAAAACTTGGAAGTAAGAACAGGGTCAGCTGAGAAGAAGTTGGCTGACTTCGAGAAGACGGCCATGGAGCTCAGCAGCCAGCTGGAGGGCAAGTGGGCTGTTCTGGGGACCCTGCTGCAGGAGTACGGGCTGCTGCAACGGCGGCTGGAGAACCTGGAGAATCAGATGCAAAACCGGAACCCCTGGGTCCTGAGGCTCCCCCCCAGCAGCAGGGATGAAGCCCCCAAG
Seq A exon
GTTTCTGTGACTACTGAAGAGGTGGCTGGGTGTTTCCCTGAGCAACAGGAAGGTAGCCCAGAAGACTGGCAGAAGGAACTCTGCAAGCGCGTAGCAAAGGAAAGGCGTGAGGTGCTAGGCTCTCTAG
Seq C2 exon
AAACAGGCCAGCTGGAATCTGCCCCGAGTGTTCTTCCCTGGATCAAGCAAGAGGAAGAGGTATGTGAGAAGAGCCTGCAGGAGACAGCCAGTGCATCCCTGTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000045466_MULTIEX1-2/2=1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.308 A=0.537 C2=0.192
Domain overlap (PFAM):
C1:
PF041117=APG6=WD(100=90.7),PF124173=DUF3669=WD(100=67.8),PF041027=SlyX=WD(100=59.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGCTGACTTCGAGAAGACG
R:
TCCTCTTGCTTGATCCAGGGA
Band lengths:
244-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: