RnoEX0101778 @ rn6
Exon Skipping
Gene
ENSRNOG00000026874 | Zfp956
Description
zinc finger protein 956 [Source:RGD Symbol;Acc:1304879]
Coordinates
chr4:77625850-77632581:+
Coord C1 exon
chr4:77625850-77626203
Coord A exon
chr4:77627512-77627638
Coord C2 exon
chr4:77632474-77632581
Length
127 bp
Sequences
Splice sites
3' ss Seq
GGGGACTTGTGTTCTTCCAGGTT
3' ss Score
7.79
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
Exon sequences
Seq C1 exon
GACTGGCATATGGGGCCTGACCTCCAACAACAGGCCCAGATCCAGTGCACAGAGACCTCCCTTTTAGCTCTCCTAGCTGCTATTCAGGCAGTGGAGAAGAAAACAGAGTCCCAGGGTATCCACCTTCAAAATTTGGAAGTGCGGACAGGATCAGCCGAGAAGAAGCTGACTGACTTTGAGAAGACAGCTGTGGAGCTCAGCAGCCAGCTGGAGGGCAAGTGGGCCGTGCTGGGGACCCTGCTGCAGGAGTACGGGCTGCTGCAGCGACGGCTGGAGAACCTGGAGAACCAGATGCAAAACCGGAACCCCTGGGTCCTGAGGCTTCCTCCCAGCAGCAAGGATGAAGCCCCCAAG
Seq A exon
GTTTCTGTGATTACTGAAGAGGTGACTGGGTGTTTCCCAGAGCAACAGGAAGGCAGCCCGGAAGACTGGCAAAAGGAGCTCTGTAAGCATGTGGCAAAGGAAAGGCGTGAGGTGCTGGGCTCTCTAG
Seq C2 exon
AAACAGGCCAGCTGGAATCTGCCCCGAGTGTTCTTCCCTGGATCAAGCAAGAGGAAGAGGTGTGTGAGAAGAGCCTGCAAGAGACAACCAGTGCATCCCTATGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026874_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.271 A=0.488 C2=0.216
Domain overlap (PFAM):
C1:
PF124173=DUF3669=WD(100=69.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGAGAAGAAGCTGACTGAC
R:
TCCTCTTGCTTGATCCAGGGA
Band lengths:
256-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]