MmuEX1001409 @ mm10
Exon Skipping
Gene
ENSMUSG00000086333 | 1700120E14Rik
Description
RIKEN cDNA 1700120E14 gene [Source:MGI Symbol;Acc:MGI:1920856]
Coordinates
chr18:74495321-74523253:-
Coord C1 exon
chr18:74522558-74523253
Coord A exon
chr18:74502422-74503058
Coord C2 exon
chr18:74495321-74496114
Length
637 bp
Sequences
Splice sites
3' ss Seq
CTTATTTCTCCTTTATTTAGGAA
3' ss Score
10.15
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
CTTGGATCCTCTAACTCTCCAACTCAAATGTGACTTTTGTAACCTGAAAATGTTCACTCGAGTCAGTCACACTCCATGAACACAGAATCTCAAGGACAGGGACCAGTAAGGAAGCAAGCTGTGATAGCCAGCCTTGGTTTTCATCTTGACTCCATCTGGAATCATGTAACACCTAAGCAGCTGCACACCTGATTAGGATTTTCTTGAATGGATCATTTGAAGTGAGGGAAAGCACCCTAGATCTGGGTACATCGTGTACCCCCACGTCTAAGGACATGGAAGGAGGAGGCTTACCTTTTGGCTACCTGCCCACTCTCTGGCTGACAAACTCATCCTTCCTGCTGTTGGCCCATCATTTCACTGGTATTAGCACTGACATCTTTAGAATTCCACCACAGACTGAAGAGTACAGAGAGATCCAGCCGCCTGGACTGAAAAACTACGAGATTCTTGGCCTTTCTATTAGAAGACAGCCATTCGGACTCGCTAACCCACAACCT
Seq A exon
GAAGAGGAATCCTTTTTGCCTGGATAGAAAATACTAGAGATCCAAAGGAAGGTCAGCTAAGTGGCACCTGTGTGTGTCCAGGAAGGAAGAGACTTGTAGACTAAGATGCCAACGAGGAAGTCTTGTGCCTTTGAGAACAAACTCGCATTTCTCCTGTGATCTTGACAGCACTAGGGTAGTTCCCCACAGACCCCAGGTATAAAGGCCAATCAGCCTGGGGAAAGGCCACCTATTCACACCTAAGAGCTTGTGATTCTTTCTTCTTGCAAGCCCTACTTCCTACTACAGAGCTCCCACCTCCTACTACAGTTTTCTCCTCCATGAAACAAAGCTCAGTGTTGTCTGTATCTCACAGAAGAGCTCTGAGCATGAACTGTGAACTGAGATCAAAGGGAAAGTAGGCAGCGAAAAGTCAGGCTCCAGCAGGAAACAGCAACTGTGAAGCTCCGCTGCCATGCCGTGCTACAGCAAAGGCAGGCTCTTTATGGGCTAATTCCTAGATGGTCACCTCCATAAAGTGCTTGGGACCTTGTTAAAATCATAGGACGACAACTCACACTGCTCAGCCATATTTACCTTCCACACTACAATGAGACAGAAGCAACTGACTTCATTACGATGAGGTAACCCAGGTGAG
Seq C2 exon
GTCTTCCAACTCTTGGAAAGAGAATTCCACTCCTCAACAAAGCGGTCTGTCAATGCCTCTCGAAGCTCACTCAGCTTTATCTTTCCATGAAACCACCCTTTTGAGGTTGAGTGTTGGAATTAAGTGTGCACCAGCTGTTACAAAGATGTTGGACTGCTCCATCAGGTGGCAAACATTTTCCTCTAAGAAAAGATCCCTTCGCTTTTCCTCCTAAGTCTACATGTCAAAAGACAGCAGCCTGGTGTGTCTATAGTCTGCCTCATTTCTAAGACCATCTACCTCTCACTCCCTGTGTTCTTAAAGAAACTAGAACAGCCACCACACAGCTCAGGTGTGCTAGCTTGTAGACAGTTTCAAAAGGATGCTCAAGAAAGTTTGGGAGGAGCTAAGAGACATCAATTATGTAATGAAGAGACAATAAATAATTAGCTATGATCAACTTTTGGTATTGTCCATCTGAACTGAAGTTAAAAAAAAAATCCCACCTCACATCTAATGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000086333_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTCGGACTCGCTAACCCAC
R:
GCTGTGTGGTGGCTGTTCTAG
Band lengths:
353-990
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types