MmuEX1018001 @ mm10
Exon Skipping
Gene
ENSMUSG00000025885 | Myo5b
Description
myosin VB [Source:MGI Symbol;Acc:MGI:106598]
Coordinates
chr18:74440936-74569877:+
Coord C1 exon
chr18:74440936-74441052
Coord A exon
chr18:74494552-74494730
Coord C2 exon
chr18:74569767-74569877
Length
179 bp
Sequences
Splice sites
3' ss Seq
CGTAATCTGTCTACCCACAGAAC
3' ss Score
9.54
5' ss Seq
AAGGTATTT
5' ss Score
7.64
Exon sequences
Seq C1 exon
GTGTGCTTCCGTGGGTCTGCAGCGAAGCTCCGAGGCTCCGGGCTTCAAGCTGGCTAAGACAGCGTTCCCCCACTGCTGTCGAAGAAAGTTACCTCGATGGCTGCTTCATTGGGGAAG
Seq A exon
AACCATTGGACTATGTGAAACCGCTTTCATGGCCTTTGCTGCCAACAGCCTGCAGCTTGTTCTCTTTGAGAGCAACTCACTCTGAACCATTAAAGCCCCGCTGTCAACAGCGTCTTATAGGAGCCAATGAAAGATGTTTAAGTAAGAGCCGACTTCCTTCCCAGACCTTCAACCCCAAG
Seq C2 exon
TACACAAGGGTCTGGATCCCTGACCCAGATGAGGTGTGGCGCTCGGCTGAATTAACCAAGGACTACAAAGAAGGGGATAAGAGCCTGCAGCTCAGACTAGAAGATGACACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025885_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.027
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSMUST00000125882fB13273
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGCTTCCGTGGGTCTG
R:
GTGTCATCTTCTAGTCTGAGCTGC
Band lengths:
227-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types