MmuEX1001855 @ mm10
Exon Skipping
Gene
ENSMUSG00000106583 | 4930447N08Rik
Description
RIKEN cDNA 4930447N08 gene [Source:MGI Symbol;Acc:MGI:1918897]
Coordinates
chr3:122761955-122801981:-
Coord C1 exon
chr3:122801837-122801981
Coord A exon
chr3:122769561-122769682
Coord C2 exon
chr3:122761955-122762216
Length
122 bp
Sequences
Splice sites
3' ss Seq
AATACATCTCTCTATTTCAGTTT
3' ss Score
9.74
5' ss Seq
AATGTAAAT
5' ss Score
2.37
Exon sequences
Seq C1 exon
CATCTACCTGGGGCCTGCATTGCTGTCTGGTGCGCTCCTGCCTGTCTCCCAGGTGACGCCTACATCTCCTTCAAACAGAGGCCCCCTCAGCCTCGCAGCTCAGACCCAGGGCAGGCGCTTCTCCTTGTGTTCACAGTGACACTGG
Seq A exon
TTTTCAGCAGAAGCTCCACGTGGAATCAGATGACACAGGAGAAATGGAAGAGACTGCAAATCCTGACATCCCACCCCCTGGCCACACACCACCTCAAGAAAACCAGAACACGGCGACATAAT
Seq C2 exon
TGACTCCAGGCAACAAGTGCAACTATTTCTGAGTACATCTGTGAAGGTGTCTCGAGAAGAAATAGCACCTGAATCAACAGACTCGTGAAGAAGAGTGTTGATCCACCAATGAGAGTGGGCATTGTCCAAGCCACTCAGGATCTAGGTAGACCAGATAGCCAGGGGCAGAGGCTATTCGCCCCCTCTCCTGGAGCTCTCACCTCTATACATCAGAACTCTAGGACTTAAGGCATTTGGATTTGATTTTACTCAGCAGCCCCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000106583_MULTIEX1-3/3=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCCTTCAAACAGAGGCCCC
R:
CCCCTGGCTATCTGGTCTACC
Band lengths:
246-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types