MmuINT1001568 @ mm10
Intron Retention
Gene
ENSMUSG00000106583 | 4930447N08Rik
Description
RIKEN cDNA 4930447N08 gene [Source:MGI Symbol;Acc:MGI:1918897]
Coordinates
chr3:122798343-122799846:-
Coord C1 exon
chr3:122799743-122799846
Coord A exon
chr3:122799053-122799742
Coord C2 exon
chr3:122798343-122799052
Length
690 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGCT
5' ss Score
6.52
3' ss Seq
TCTTCGTTACTCTCAAGAAGCTG
3' ss Score
-0.24
Exon sequences
Seq C1 exon
ATAATCAAAAGAATCAGCTGCTCAAGAAGCCACTGACTCGTGGCACTGAGTGTTATGTTTGCGAGCCTATGGTGTCTCACAGGGGGCACTGTCACCCATGACAG
Seq A exon
GTAGCTCCACTTTAACCTTGTCCATGTGAGTTTCTGCAGCAGTAGAGTAGTTTTGCTTATCCCTCTCCATGCCCCCTTCACGACCCTGCCTTCAGTCCTGCACCCCATCTGACCCGCTCTGTTTCTTCTGTCCCCTCCGTAACACCACACCTCCTCAAGCATCCGTTTTTAAGGGTGGAGCCCTTCATAGGTTGATCACATTCCGGCAAATGGCCCCACACTCAAGAGTACTGGGGCAGCATGAATTGGACTGCATGAGTTTAAAGAGAGAGAAAGAGAAGATAAGCTGGGTGGGTAGGAAGATAGGGATCTGCAAGGAGCTAGGGTGGATATGATCAAAATACATCATAGGACGTCCTCAAAATTATTTTATTTGGCAGGGTGTGGTGGCATGGGTTCTTAATCCCAGCATTTGGTAGGCAGATCTCAATGAATTCAACAGTTATCAAGTTCCATGCCAGCCAGGATGTCCAAGTAGGTCCACATCTCAACGACCAAACAACCCTCCACCCACCCCCGAATGCCCACAAATGAGAGAAAACACGTGACATTTGTCTTCCTGGGTCTGGATTGGCTCACCCAGAATCAGTGCCAAGAATGGGTTATATCTTTTGGAGCTCTTGGCCTGTGAGGTCCCATAGACCCAAACATCAAAGACGATTGCTAACGCTCTTCGTTACTCTCAAGAAG
Seq C2 exon
CTGAAGATACCACATACTGGAGTCACAGACACGGGGAAGGCAAGCTGGTACCAACCTGGAAGCTTCATCTCTGCCATTAGCTTTCAGAGCACTGGAAAGTGCTATGTATAGCACCAGCCTGACTCGGTCATGAACCTCATGAGCCACAGTTACATTGGCCTGACAAGACCTGTTCACTGGTCCAATAGTGGCACTAACGGGATAGCGTAACCAACTACTTTCCAATTGGACTTAAGGCCTGCCACACAAGCTGAAACCTACACTTAGCACCGTCACTGAGACCAGAGCTCACCTCTGGAAAGGTCAAAGACCCTAAAGGAGAAACTACTGCTTTTACTGTTAAGTGGGCAGAATATTAAACTAACCAACAACTTATCATTATATTCATAGATTAGTGAATCTGTCAATTCTCATCAGAGAAGATTCTTTCTGAAGTAGATGGTAACTGATACACGGGCTCAAAATGTAGAAAATATGAGCCTGAAAAATGTGGACCCCTGAATGGGACATTATATTATACACTCAAGGCTCAGAGATCATTGTAAGAGAGGGGGAGAGGAGATTTGAGAGCCGCAGACAGGGAATGACTAGAAAGAAACAGTATCGTCTGATCACACGGCAGTCGAACATGAATTCAGTTCACGGCAGTTGTGAATGAACAAGACCTGCATAGACTCAAGCCAGACAGAATCTTAACAGAAGGAGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000106583:ENSMUST00000198879:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTTGCGAGCCTATGGTGTC
R:
GAGGTGAGCTCTGGTCTCAGT
Band lengths:
344-1034
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types