MmuEX1002106 @ mm10
Exon Skipping
Gene
ENSMUSG00000026774 | 4931423N10Rik
Description
RIKEN cDNA 4931423N10 gene [Source:MGI Symbol;Acc:MGI:1918231]
Coordinates
chr2:23245077-23257003:+
Coord C1 exon
chr2:23245077-23245125
Coord A exon
chr2:23245454-23245512
Coord C2 exon
chr2:23256931-23257003
Length
59 bp
Sequences
Splice sites
3' ss Seq
TCTCTCCTTCCATCTTGTAGACC
3' ss Score
10.33
5' ss Seq
CAGGTGCGT
5' ss Score
9.73
Exon sequences
Seq C1 exon
GCTTATCAACAAAGCTGATGCTGAAGTGACCTCACCTACGGCAAATGAG
Seq A exon
ACCTTAGGCATTAAAAGGAGGCCCATGGATCAAACTCAGATTGTCATGCTTGACAGCAG
Seq C2 exon
AAAGTGATTGAAATGCAAGACCCTTTTACAACCAATGAAGCAAGCGTGGAGAAGACACAAACCCGCAGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026774_MULTIEX2-4/6=3-5
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.441 A=0.350 C2=0.923
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSMUST00000028113fB4970
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGATGCTGAAGTGACCTCA
R:
TGGTCTGCGGGTTTGTGTCTT
Band lengths:
108-167
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types