MmuEX6099284 @ mm10
Exon Skipping
Gene
ENSMUSG00000026774 | 4931423N10Rik
Description
RIKEN cDNA 4931423N10 gene [Source:MGI Symbol;Acc:MGI:1918231]
Coordinates
chr2:23245077-23267129:+
Coord C1 exon
chr2:23245077-23245125
Coord A exon
chr2:23256931-23257003
Coord C2 exon
chr2:23266716-23267129
Length
73 bp
Sequences
Splice sites
3' ss Seq
TTATTTCAAAATATATCCAGAAA
3' ss Score
3.26
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
GCTTATCAACAAAGCTGATGCTGAAGTGACCTCACCTACGGCAAATGAG
Seq A exon
AAAGTGATTGAAATGCAAGACCCTTTTACAACCAATGAAGCAAGCGTGGAGAAGACACAAACCCGCAGACCAG
Seq C2 exon
AACCCAGGACAACGAAGTGCAAAGACAGATGCTGCCACTGAAAATCGAAGCCCATAGTTATCATGACTCCTGAAAGCATGAAGTTGGCTACCATGAACAGCTGAAAGAGAAAAGATATAGTTATATGATTAGAAAATATCTACTTTAGCCAGGCCTCAAAGAACATGATCAGGGTCTTAGGGACGATCTGTGATGAAAGAAATATTTTAAAGAACTCTTTCAATGTTGGTGCTGCCCTCATGCAGAGAGGAATTCTGGACCTTGTAAGAATACTGGCTGTATACATACTGTGCGATCCTTGTACTTTAGTCCTTCAGGCTTAGTTTCATAAAGTGGAAAACAAACCCACATATATCATGGAATACTTGTAAACATGAAAATAAAAACTGAGATGACTTTGTTCAGCTTTTATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026774_MULTIEX2-5/6=3-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.441 A=0.923 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSMUST00000028113fB4968
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTCACCTACGGCAAATGAG
R:
TCTTTGAGGCCTGGCTAAAGT
Band lengths:
183-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types