MmuALTA0000541-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000026774 | 4931423N10Rik
Description
RIKEN cDNA 4931423N10 gene [Source:MGI Symbol;Acc:MGI:1918231]
Coordinates
chr2:23256931-23263743:+
Coord C1 exon
chr2:23256931-23257003
Coord A exon
chr2:23263670-23263672
Coord C2 exon
chr2:23263673-23263743
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
3' ss Seq
TCATAATTTATTATAATTAGCAG
3' ss Score
1.4
Exon sequences
Seq C1 exon
AAAGTGATTGAAATGCAAGACCCTTTTACAACCAATGAAGCAAGCGTGGAGAAGACACAAACCCGCAGACCAG
Seq A exon
CAG
Seq C2 exon
AATCTGAACTAGAGGTGTTCTCATTAGAAGAGGAAATCAGTTACAAAGAGACTATAAATAATCTACAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026774-14-17,14-16-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.923 A=NA C2=0.347
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACCAATGAAGCAAGCGTGG
R:
AGTCTCTTTGTAACTGATTTCCTCT
Band lengths:
98-101
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types