MmuEX6099283 @ mm10
Exon Skipping
Gene
ENSMUSG00000026774 | 4931423N10Rik
Description
RIKEN cDNA 4931423N10 gene [Source:MGI Symbol;Acc:MGI:1918231]
Coordinates
chr2:23256931-23267129:+
Coord C1 exon
chr2:23256931-23257003
Coord A exon
chr2:23263673-23263743
Coord C2 exon
chr2:23266716-23267129
Length
71 bp
Sequences
Splice sites
3' ss Seq
TAATTTATTATAATTAGCAGAAT
3' ss Score
1.6
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
AAAGTGATTGAAATGCAAGACCCTTTTACAACCAATGAAGCAAGCGTGGAGAAGACACAAACCCGCAGACCAG
Seq A exon
AATCTGAACTAGAGGTGTTCTCATTAGAAGAGGAAATCAGTTACAAAGAGACTATAAATAATCTACAGCAG
Seq C2 exon
AACCCAGGACAACGAAGTGCAAAGACAGATGCTGCCACTGAAAATCGAAGCCCATAGTTATCATGACTCCTGAAAGCATGAAGTTGGCTACCATGAACAGCTGAAAGAGAAAAGATATAGTTATATGATTAGAAAATATCTACTTTAGCCAGGCCTCAAAGAACATGATCAGGGTCTTAGGGACGATCTGTGATGAAAGAAATATTTTAAAGAACTCTTTCAATGTTGGTGCTGCCCTCATGCAGAGAGGAATTCTGGACCTTGTAAGAATACTGGCTGTATACATACTGTGCGATCCTTGTACTTTAGTCCTTCAGGCTTAGTTTCATAAAGTGGAAAACAAACCCACATATATCATGGAATACTTGTAAACATGAAAATAAAAACTGAGATGACTTTGTTCAGCTTTTATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026774_MULTIEX2-6/6=5-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.923 A=0.258 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGACACAAACCCGCAGAC
R:
TTGAGGCCTGGCTAAAGTAGA
Band lengths:
183-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types