MmuEX6099283 @ mm9
Exon Skipping
Gene
ENSMUSG00000026774 | 4931423N10Rik
Description
RIKEN cDNA 4931423N10 gene [Source:MGI Symbol;Acc:MGI:1918231]
Coordinates
chr2:23112451-23120152:+
Coord C1 exon
chr2:23112451-23112523
Coord A exon
chr2:23119193-23119263
Coord C2 exon
chr2:23119991-23120152
Length
71 bp
Sequences
Splice sites
3' ss Seq
TAATTTATTATAATTAGCAGAAT
3' ss Score
1.6
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
AAAGTGATTGAAATGCAAGACCCTTTTACAACCAATGAAGCAAGCGTGGAGAAGACACAAACCCGCAGACCAG
Seq A exon
AATCTGAACTAGAGGTGTTCTCATTAGAAGAGGAAATCAGTTACAAAGAGACTATAAATAATCTACAGCAG
Seq C2 exon
CAATGTTGAAAGTTCTAATTCCAGAGAATTCATAATTTACCAAGTCTACATTGGGGTACAGGAGACAGAAGAAAGTTCTGCAACTGCCTAAATCATTGGAGGAAACTCATAGAGTTGTATTGTGAACCCACATATTTACTTTCCTTTTTAAATGTTTCAATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026774-'8-11,'8-10,9-11=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.960 A=0.258 C2=0.500
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACCAATGAAGCAAGCGTGG
R:
TGGGTTCACAATACAACTCTATGAGT
Band lengths:
175-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: