MmuEX6099284 @ mm9
Exon Skipping
Gene
ENSMUSG00000026774 | 4931423N10Rik
Description
RIKEN cDNA 4931423N10 gene [Source:MGI Symbol;Acc:MGI:1918231]
Coordinates
chr2:23100597-23119263:+
Coord C1 exon
chr2:23100597-23100645
Coord A exon
chr2:23112451-23112523
Coord C2 exon
chr2:23119190-23119263
Length
73 bp
Sequences
Splice sites
3' ss Seq
TTATTTCAAAATATATCCAGAAA
3' ss Score
3.26
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
GCTTATCAACAAAGCTGATGCTGAAGTGACCTCACCTACGGCAAATGAG
Seq A exon
AAAGTGATTGAAATGCAAGACCCTTTTACAACCAATGAAGCAAGCGTGGAGAAGACACAAACCCGCAGACCAG
Seq C2 exon
CAGAATCTGAACTAGAGGTGTTCTCATTAGAAGAGGAAATCAGTTACAAAGAGACTATAAATAATCTACAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026774-'7-9,'7-8,8-9=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.588 A=0.960 C2=0.434
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGATGCTGAAGTGACCTCA
R:
AGTCTCTTTGTAACTGATTTCCTCT
Band lengths:
92-165
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: