RnoEX0068381 @ rn6
Exon Skipping
Gene
ENSRNOG00000016992 | Potec
Description
POTE ankyrin domain family, member C [Source:RGD Symbol;Acc:1308454]
Coordinates
chr17:89585238-89602749:-
Coord C1 exon
chr17:89602677-89602749
Coord A exon
chr17:89586115-89586188
Coord C2 exon
chr17:89585238-89585399
Length
74 bp
Sequences
Splice sites
3' ss Seq
TCATAATTTATTAAAATTAGCAG
3' ss Score
1.01
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
AAAGTGATTGAATTGCAAGACCCTCTTACAACCAGTGAGACAAGCGTGAAGAAGATACAAACCTGCAGATCAG
Seq A exon
CAGAATCTGAACTAGAGGTGATATCATTGGAAGATGAAATCAGTGGCAAAGAGACTATAAATAACCCACAGCAG
Seq C2 exon
CAATGCTGCAAGTTCTAATTCAAGAGAAGTTCATAATTTACCAAGTCTACTGTGGGGTTCAGTAGACAGAAGAAACTTCTGGAACTGTCTATATCATTGGGGAAACTCATGACGTTGGATTGTGAACCCACATATTTGTCTTCCTTCTTAAATAAATGTTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016992_MULTIEX1-2/2=1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.080 A=0.042 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAACCAGTGAGACAAGCGTG
R:
TGGGTTCACAATCCAACGTCA
Band lengths:
176-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]