RnoEX0068380 @ rn6
Exon Skipping
Gene
ENSRNOG00000016992 | Potec
Description
POTE ankyrin domain family, member C [Source:RGD Symbol;Acc:1308454]
Coordinates
chr17:89586115-89630858:-
Coord C1 exon
chr17:89630810-89630858
Coord A exon
chr17:89602677-89602749
Coord C2 exon
chr17:89586115-89586188
Length
73 bp
Sequences
Splice sites
3' ss Seq
TTATTTCAAAATATATCCAGAAA
3' ss Score
3.26
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
GCCTATCAATGAAGTGGATGCTGAAGTGACCTCATCTATGGCAATTGAG
Seq A exon
AAAGTGATTGAATTGCAAGACCCTCTTACAACCAGTGAGACAAGCGTGAAGAAGATACAAACCTGCAGATCAG
Seq C2 exon
CAGAATCTGAACTAGAGGTGATATCATTGGAAGATGAAATCAGTGGCAAAGAGACTATAAATAACCCACAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016992_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.137 A=0.080 C2=0.042
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTATCAATGAAGTGGATGCTGA
R:
TGCTGTGGGTTATTTATAGTCTCT
Band lengths:
122-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]