RnoALTA0030385-1/3 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000016992 | Potec
Description
POTE ankyrin domain family, member C [Source:RGD Symbol;Acc:1308454]
Coordinates
chr17:89586115-89602749:-
Coord C1 exon
chr17:89602677-89602749
Coord A exon
NA
Coord C2 exon
chr17:89586115-89586185
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
3' ss Seq
TAATTTATTAAAATTAGCAGAAT
3' ss Score
0.26
Exon sequences
Seq C1 exon
AAAGTGATTGAATTGCAAGACCCTCTTACAACCAGTGAGACAAGCGTGAAGAAGATACAAACCTGCAGATCAG
Seq A exon
NA
Seq C2 exon
AATCTGAACTAGAGGTGATATCATTGGAAGATGAAATCAGTGGCAAAGAGACTATAAATAACCCACAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016992-13-16,13-15,13-14-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.080 A=NA C2=0.042
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAACCAGTGAGACAAGCGTG
R:
TTGCCACTGATTTCATCTTCCA
Band lengths:
92-95
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]