MmuEX1002326 @ mm10
Exon Skipping
Gene
ENSMUSG00000006204 | 5430419D17Rik
Description
RIKEN cDNA 5430419D17 gene [Source:MGI Symbol;Acc:MGI:1918645]
Coordinates
chr7:131273709-131278420:+
Coord C1 exon
chr7:131273709-131273774
Coord A exon
chr7:131277580-131277621
Coord C2 exon
chr7:131278352-131278420
Length
42 bp
Sequences
Splice sites
3' ss Seq
TTACCCTGCTGGTTCAACAGTTC
3' ss Score
7.13
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
CATCAACTGCAGAAAGGCCAACTCCGCCCAGTAATGTTTCTTTCTTTACTGTTTTCTCTAAGTCAG
Seq A exon
TTCCTACCTCAAATCCAGCCACAGTTTCAGTCCTCACAACTG
Seq C2 exon
GCATCACCCCTACTCTGGTAGCAGTAACTCCTTTGCCTGATAAGGGCCTGTGCCCACCACACTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000006204_MULTIEX3-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.217 A=0.600 C2=0.667
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAACTGCAGAAAGGCCAACT
R:
CTGTGCAGTGTGGTGGGC
Band lengths:
133-175
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types