MmuEX1002327 @ mm10
Exon Skipping
Gene
ENSMUSG00000006204 | 5430419D17Rik
Description
RIKEN cDNA 5430419D17 gene [Source:MGI Symbol;Acc:MGI:1918645]
Coordinates
chr7:131273709-131279371:+
Coord C1 exon
chr7:131273709-131273774
Coord A exon
chr7:131278352-131278420
Coord C2 exon
chr7:131279333-131279371
Length
69 bp
Sequences
Splice sites
3' ss Seq
CCCCTTGTGTTTCATATCAGGCA
3' ss Score
8.6
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
CATCAACTGCAGAAAGGCCAACTCCGCCCAGTAATGTTTCTTTCTTTACTGTTTTCTCTAAGTCAG
Seq A exon
GCATCACCCCTACTCTGGTAGCAGTAACTCCTTTGCCTGATAAGGGCCTGTGCCCACCACACTGCACAG
Seq C2 exon
GTGTGTCTTTAACCTCCACAGAAGGGAAGACCTCCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000006204_MULTIEX3-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.217 A=0.667 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTGCAGAAAGGCCAACTCC
R:
AGGTCTTCCCTTCTGTGGAGG
Band lengths:
95-164
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types