MmuEX1002597 @ mm10
Exon Skipping
Gene
ENSMUSG00000109344 | A26c2
Description
ANKRD26-like family C, member 2 [Source:MGI Symbol;Acc:MGI:3644757]
Coordinates
chr7:62811806-62821068:-
Coord C1 exon
chr7:62820954-62821068
Coord A exon
chr7:62820636-62820809
Coord C2 exon
chr7:62811806-62811912
Length
174 bp
Sequences
Splice sites
3' ss Seq
TTTGACAATGTTTCCTACAGGCT
3' ss Score
7.92
5' ss Seq
AGGGTAATG
5' ss Score
5.98
Exon sequences
Seq C1 exon
AACTGCACTGCACTTCGCATGTTTTTATGGTCATCTGCATCTGGTTCAATTCTTATTATATAATGACTGCATGATAAATGCCCTTGATGATCAAAAGGCCACACCATTAATGAAG
Seq A exon
GCTGTACAAAGCTGGGAGACAAAGATTGTTTCTGTCCTCCTTGATAATGGAGCAGATCCCAATTGTAAAGATTTCAATGGAGAAACAGCACTACATCAGGCGGTATATGTTAACAGTCCAGATATTGCCACCTGTCTTCTTGAATATGGAGCAGAAATTGAAGAAACTACTAGG
Seq C2 exon
GATGGGTTTACACCTCTACTTCTAGCACTCCGAGAAAGAAAATTCCTCATGGTAGAATATTTAATAAAAAATGGTGCAAATATTCATGCCTGGGATGATTATCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000109344-'1-2,'1-1,2-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(40.4=100)
A:
PF127962=Ank_2=PD(24.5=39.7),PF0002325=Ank=WD(100=56.9)
C2:
PF127962=Ank_2=PU(33.3=83.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTGCACTGCACTTCGC
R:
TGATAATCATCCCAGGCATGAA
Band lengths:
219-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types