RnoEX0001325 @ rn6
Exon Skipping
Gene
ENSRNOG00000051782 | AABR07004061.1
Description
NA
Coordinates
chr1:123588197-123623099:-
Coord C1 exon
chr1:123622982-123623099
Coord A exon
chr1:123616520-123616693
Coord C2 exon
chr1:123588197-123588303
Length
174 bp
Sequences
Splice sites
3' ss Seq
ATTGACAATATTTTTCCTAGGCT
3' ss Score
4.77
5' ss Seq
AAGGTACTG
5' ss Score
8.56
Exon sequences
Seq C1 exon
AAGCCATATACAGCAAACCAGTCACTAATGAAGCAGTGTGCATGGGAAAGATCAAAGTGGTGCTGCATCTCCTCTCTAAGAAGAAATTTAGCATAAATGACACGGATAAAGGAAAACG
Seq A exon
GCTGTACAAAGCTGGGAGACAAAGATTGCTTCTGTCCTCCTTGATAATGGAGCAAATCCCAATTGTAAAGATTCCAATGGAGAAACAGCACTACATCAGGCAGTATATGTTGACAGTCCAGATATTGCTGCCAGTCTCCTTGAATATGGTGCAGACATTGAAGAAACTACAAAG
Seq C2 exon
GATGGGTTTACACCTCTCCTGCTGGCACTTCGAGAAAGGAAACTCCTCACAGCAGAATATTTAATAAAACATGGTGCAAATATTTATGCACGGGATGATTATCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000051782_MULTIEX2-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCCATATACAGCAAACCAGTCA
R:
AATCATCCCGTGCATAAATATTTGCA
Band lengths:
218-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]