RnoINT0000584 @ rn6
Intron Retention
Gene
ENSRNOG00000051782 | AABR07004061.1
Description
NA
Coordinates
chr1:123616520-123616952:-
Coord C1 exon
chr1:123616838-123616952
Coord A exon
chr1:123616694-123616837
Coord C2 exon
chr1:123616520-123616693
Length
144 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGTT
5' ss Score
6.44
3' ss Seq
ATTGACAATATTTTTCCTAGGCT
3' ss Score
4.77
Exon sequences
Seq C1 exon
AACTGCACTGCACTTCGCATGTTTTTATGGTCATCTGCATCTGGTTCAGTTCTTATTATATAATGACTGCATGATAAATGCCCTTGATGATCAAAAGGCCACACCACTAATGAAG
Seq A exon
GTAGTTCAAAGTTTTCAATTTCAAGAATGAATTTAATCTAAATGGTTAGAGTAAAAGGAACATTAGTATCACTTCAATATAAATCATGAAGAAAACCGGGGGAAGTTCATGTTGAATTCTTTGAATTGACAATATTTTTCCTAG
Seq C2 exon
GCTGTACAAAGCTGGGAGACAAAGATTGCTTCTGTCCTCCTTGATAATGGAGCAAATCCCAATTGTAAAGATTCCAATGGAGAAACAGCACTACATCAGGCAGTATATGTTGACAGTCCAGATATTGCTGCCAGTCTCCTTGAATATGGTGCAGACATTGAAGAAACTACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000051782:ENSRNOT00000090893:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACTTCGCATGTTTTTATGGTCA
R:
TTCAAGGAGACTGGCAGCAAT
Band lengths:
250-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]