MmuINT1003029 @ mm10
Intron Retention
Gene
ENSMUSG00000109344 | A26c2
Description
ANKRD26-like family C, member 2 [Source:MGI Symbol;Acc:MGI:3644757]
Coordinates
chr7:62820636-62821068:-
Coord C1 exon
chr7:62820954-62821068
Coord A exon
chr7:62820810-62820953
Coord C2 exon
chr7:62820636-62820809
Length
144 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGTT
5' ss Score
6.44
3' ss Seq
TTTGACAATGTTTCCTACAGGCT
3' ss Score
7.92
Exon sequences
Seq C1 exon
AACTGCACTGCACTTCGCATGTTTTTATGGTCATCTGCATCTGGTTCAATTCTTATTATATAATGACTGCATGATAAATGCCCTTGATGATCAAAAGGCCACACCATTAATGAAG
Seq A exon
GTAGTTCAAAGTTTTCAATTTCAAGAATGAATTTGATATGAATGGTTAGAATAAAAAGAAAATTAATGTCACTTAAATATAAATCATGAAGAAAGCTGAGAGAAGCTTATGTTGAATTCTTTGATTTGACAATGTTTCCTACAG
Seq C2 exon
GCTGTACAAAGCTGGGAGACAAAGATTGTTTCTGTCCTCCTTGATAATGGAGCAGATCCCAATTGTAAAGATTTCAATGGAGAAACAGCACTACATCAGGCGGTATATGTTAACAGTCCAGATATTGCCACCTGTCTTCTTGAATATGGAGCAGAAATTGAAGAAACTACTAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000109344:ENSMUST00000207359:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(40.4=100)
A:
NA
C2:
PF127962=Ank_2=PD(24.5=39.7),PF0002325=Ank=WD(100=56.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACTTCGCATGTTTTTATGGTCA
R:
GACAGGTGGCAATATCTGGACTG
Band lengths:
242-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types