MmuEX1002598 @ mm10
Exon Skipping
Gene
ENSMUSG00000109344 | A26c2
Description
ANKRD26-like family C, member 2 [Source:MGI Symbol;Acc:MGI:3644757]
Coordinates
chr7:62771957-62808209:-
Coord C1 exon
chr7:62808148-62808209
Coord A exon
chr7:62782673-62782840
Coord C2 exon
chr7:62771957-62772029
Length
168 bp
Sequences
Splice sites
3' ss Seq
TCTGATTTGTCTTCCTGCAGGCG
3' ss Score
10.99
5' ss Seq
CAGGTAATC
5' ss Score
6.99
Exon sequences
Seq C1 exon
AAGGAGTTTAATTTTGGACTATGAGGACTCACTCCTCTTAGGTCAGCACCATATCTTCTCAG
Seq A exon
GCGCTGAAGAACTCTGATCCCTTCACTGGGGTGAACCAGAGATACGAACACTCTAACTTTGCCTGGCCAGAGCAAAGTAAAAAACACCTTGTAAAATCAATTCTGGTAGTCTACCACGCGGCCCACAGTGCTGGCTTGCAGCTTAGGCGAGTGTATTCTGGCCTGCAG
Seq C2 exon
ATATTGCATCAAGTCTGAGTCACTGATTTCTATGTGCTCAAGAGAGGAGGAAATAGAAAATTCTGAAATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000109344_MULTIEX1-1/2=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(14.4=59.1)
A:
NO
C2:
NA
Main Inclusion Isoform:
ENSMUST00000207359fB5052
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGAGTTTAATTTTGGACTATGAGG
R:
TTTTCTATTTCCTCCTCTCTTGAGCA
Band lengths:
122-290
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types