MmuEX1002599 @ mm10
Exon Skipping
Gene
ENSMUSG00000109344 | A26c2
Description
ANKRD26-like family C, member 2 [Source:MGI Symbol;Acc:MGI:3644757]
Coordinates
chr7:62771957-62808209:-
Coord C1 exon
chr7:62808148-62808209
Coord A exon
chr7:62778422-62778452
Coord C2 exon
chr7:62771957-62772029
Length
31 bp
Sequences
Splice sites
3' ss Seq
TACTATTGCTTCAATCACAGGAC
3' ss Score
5.9
5' ss Seq
GGGGTAGGA
5' ss Score
4.36
Exon sequences
Seq C1 exon
AAGGAGTTTAATTTTGGACTATGAGGACTCACTCCTCTTAGGTCAGCACCATATCTTCTCAG
Seq A exon
GACAGCTGCGTACAGACTTCTATTCATCGGG
Seq C2 exon
ATATTGCATCAAGTCTGAGTCACTGATTTCTATGTGCTCAAGAGAGGAGGAAATAGAAAATTCTGAAATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000109344_MULTIEX1-2/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(14.4=59.1)
A:
NO
C2:
NA
Main Skipping Isoform:
ENSMUST00000207359fB5052
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGTTTAATTTTGGACTATGAGGA
R:
TTTCCTCCTCTCTTGAGCACA
Band lengths:
114-145
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types