MmuEX1002861 @ mm10
Exon Skipping
Gene
ENSMUSG00000062017 | Abca14
Description
ATP-binding cassette, sub-family A (ABC1), member 14 [Source:MGI Symbol;Acc:MGI:2388708]
Coordinates
chr7:120255261-120278327:+
Coord C1 exon
chr7:120255261-120255558
Coord A exon
chr7:120261947-120262314
Coord C2 exon
chr7:120278075-120278327
Length
368 bp
Sequences
Splice sites
3' ss Seq
GGCAAGCTCTCCTCTTTCAGGGA
3' ss Score
7.3
5' ss Seq
TAAGTGAGT
5' ss Score
6.43
Exon sequences
Seq C1 exon
TGGTCTCTTTACATCCAGCAGTTCAGAGCCATGTTCATCAAAAGGGTAATGTTCTCTTGGCGCTACTGGAAACTGCTGCTGTTGCAGTTGCTGGCACTTCTGGGTCTCATGTATCTTCTGATAAAAGGAATAAGTTTCTCAGTTCCTAAAGAGCCTGCCAGGGTGATGGACTTGGAACAGTATGGCGAGACCATTGTTCCTTTCTCAGTTTCTGGGGACCCCAATTTGACCCAAATTCTCACCAAAAATCTTGAGACCATGTTGAAGGCTAAAAAGCAAAAAATTCATGAAGTACAAG
Seq A exon
GGAAGGTGCACAGTTATCTGGTGTTTGGACCTCCTCCTGGCTGAAGATGAAGGCCCAAAACAGGATCTTTCCCAGAAGCTGTGTTGCTTTGGCCAGGAAGGTGGCCGGTTGTCTGGAGCCAAAGATGGCGAAGATGGTGCCGCCTCAGAAGCTCTGTGGCTCTCGCCTGTCCCAGAAACGGCTGGCCTCTGTATTCCACATCGTCACCCGTGCAGCCTGCCCTCCGCGGAGTCCCGGAGCCAAGGAGGCTCCCGACGGGGCCTGAGGCAGAAACCTCTCGGGCCGGGCGGACCCCTGTGCTCTCACCAGGAAGGTGGCTGGTTGTCTGGAGCCGAAGATGGCGCTGCCTCCCTCCTGTATTTCTTTAA
Seq C2 exon
GTGATATGAAGAACTACTTGCTGACAAGTAAAGACTGCATTTACTCGTGCATCGTTGCCTTTTCCCTTGATGTTACCACAGAAGAAAAGACATTTATCTTTTGGTTTAACAATGAGGCATACCATGCAGCACCGTTATCTCTGTCGATATTAGACAACATTATTTATAAGTATCTCTCTGGCCCTGATGCCACCATTACAGTCTCCAACAACCCTCAGCCTCAACGTGTCACCAAAGACAAATCTAATGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000062017-'27-25,'27-24,28-25
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.141
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PU(20.3=80.0)
A:
NO
C2:
PF126982=ABC2_membrane_3=FE(21.3=100)
Main Inclusion Isoform:
ENSMUST00000084640fB5131
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCACTTCTGGGTCTCATG
R:
GAGATAACGGTGCTGCATGGT
Band lengths:
349-717
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types