MmuEX0002953 @ mm10
Exon Skipping
Gene
ENSMUSG00000062017 | Abca14
Description
ATP-binding cassette, sub-family A (ABC1), member 14 [Source:MGI Symbol;Acc:MGI:2388708]
Coordinates
chr7:120253297-120278327:+
Coord C1 exon
chr7:120253297-120253459
Coord A exon
chr7:120255261-120255558
Coord C2 exon
chr7:120278075-120278327
Length
298 bp
Sequences
Splice sites
3' ss Seq
ATCTTTCTCTCCTCTTGCAGTGG
3' ss Score
11
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GGTCAGTAATCTGGAAGATTTGAAATTGAACACTGAGATTGCTCCATCAGCTTCCATAGTGAGCCAAAGCTCAAATGAAGACAACCAGAACATGAATGTGCCCAGAAATTTTGAGCGACCAGGTTACTCAAGAAGACACTTGGATTCTTCATTCAATGCCGGG
Seq A exon
TGGTCTCTTTACATCCAGCAGTTCAGAGCCATGTTCATCAAAAGGGTAATGTTCTCTTGGCGCTACTGGAAACTGCTGCTGTTGCAGTTGCTGGCACTTCTGGGTCTCATGTATCTTCTGATAAAAGGAATAAGTTTCTCAGTTCCTAAAGAGCCTGCCAGGGTGATGGACTTGGAACAGTATGGCGAGACCATTGTTCCTTTCTCAGTTTCTGGGGACCCCAATTTGACCCAAATTCTCACCAAAAATCTTGAGACCATGTTGAAGGCTAAAAAGCAAAAAATTCATGAAGTACAAG
Seq C2 exon
GTGATATGAAGAACTACTTGCTGACAAGTAAAGACTGCATTTACTCGTGCATCGTTGCCTTTTCCCTTGATGTTACCACAGAAGAAAAGACATTTATCTTTTGGTTTAACAATGAGGCATACCATGCAGCACCGTTATCTCTGTCGATATTAGACAACATTATTTATAAGTATCTCTCTGGCCCTGATGCCACCATTACAGTCTCCAACAACCCTCAGCCTCAACGTGTCACCAAAGACAAATCTAATGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000062017_CASSETTE6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.218 A=0.000 C2=0.141
Domain overlap (PFAM):
C1:
NO
A:
PF126982=ABC2_membrane_3=PU(20.3=80.0)
C2:
PF126982=ABC2_membrane_3=FE(21.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCAGAAATTTTGAGCGACC
R:
TCTTTGGTGACACGTTGAGGC
Band lengths:
302-600
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types