BtaEX6109105 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MHK9]
Coordinates
chr25:19469262-19512503:+
Coord C1 exon
chr25:19469262-19469415
Coord A exon
chr25:19471092-19471392
Coord C2 exon
chr25:19512251-19512503
Length
301 bp
Sequences
Splice sites
3' ss Seq
CTGTCCTTCTGTCTTGTCAGTGG
3' ss Score
8.48
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
GGTCAGTCAATCGAATAATCAGATTTTGCAGACCCTAAAAAATGAAGATGAAAGTGAAGACACAAATCAGAATATGAATGTCCCTAGAAATTTTGAGAGATCATATGCTTCCTCCAACTTGAATGAGCGCTCTAATATTACATTAAATACTGGG
Seq A exon
TGGGCTCTTTACAGTCAGCAGTTCTTTGCCATGTTCATGAAAAGAGCAATGTTCTCTTGGCGCAACTGGAATTTGATCTTGCTGCAGATACTAGCACTCCTGGGTATTTTTTATTTTTTGATGAGCGATGTGGAGCTTTCAATAGGTGAAGAAGATCTTGACAGAGAAATGGATCTGGAACAATATGGTCAAACAATTGTACCCTTCTCAATTTCTGGAAATTCTGAGTTTACTACGAATTTCGTAAAAAATCTTGAGATCTTGCTAAAGGCTAAGAAACAGAAACTTCACGAAGTAAAAG
Seq C2 exon
GTGATCTGAAGACCTATTTGGTGGATAGTCAAAAATGTATTTACTCGTGCATTATTGCATTTTCCATTGAGGTTAATGGAAATGAAAATACAGTTAACTTTTGGTTCAACGATGAGGCATACCATTCATCACCATTATCTCTGGCTGTATTAGACAATGTCATTTTTATGTCACTTTCTGGCCCTGATGCTTCCATTACAGTCGTCAACAAACCTCAGCCTGTACGTTCTGCTTCTAGTGGACCTAAATATTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006717-'23-23,'23-22,24-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.385 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF126982=ABC2_membrane_3=PU(20.5=80.2)
C2:
PF126982=ABC2_membrane_3=FE(21.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGAATAATCAGATTTTGCAGACCCT
R:
GTAATGGAAGCATCAGGGCCA
Band lengths:
343-644
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]