DreEX6015420 @ danRer10
Exon Skipping
Gene
ENSDARG00000100524 | abca3b
Description
ATP-binding cassette, sub-family A (ABC1), member 3b [Source:ZFIN;Acc:ZDB-GENE-050517-2]
Coordinates
chr3:12520142-12524817:+
Coord C1 exon
chr3:12520142-12520340
Coord A exon
chr3:12520449-12520758
Coord C2 exon
chr3:12524559-12524817
Length
310 bp
Sequences
Splice sites
3' ss Seq
ATGCATGTGTTTGCCCTCAGGCC
3' ss Score
9.32
5' ss Seq
CAGGTACAA
5' ss Score
7.09
Exon sequences
Seq C1 exon
GGTCGGCAAGCTGGTGGACTCGAGTCTGGATATTCAGGCGATTCAGCTCCCGGCTCTGCAGTACCAGCACGAGCGGCGCTCTCACGACTGGACCATGGACGACTCCAGCAGCATCAGCGGCATGACAGACGTGACCGATTTCACCGACAGCTGCACAATGATCTCAGAGGACGGATCCAACATCAAGCTCAACACCGGG
Seq A exon
GCCAGACTGTATATGCAGCAGTTCTACGCCATGTTCCTGAAGAGGGCGCTCTACAGCTGGCGCAACTGGAAAGTGATGGTGGCTCAGTTTCTGGTGCCGCTCATCTTCACAGTGTTGGCCCTCGTAGTGGCCCGTAGCCTGCCCAGCAGCCATTCTTCACCACAGCTCCGCCTGGCGCTAAAACAATACGGCCAAACCCATGTACCTGTTGCTGTTGAAGCTAACGCCGGGCCACTGGCTTCACTTCTGGCTGAAATCTACACCACACAGCTGCCTTCCCAGAATGCCATTGCTGCACCTAATATAACAG
Seq C2 exon
ATTTCTCGGAGTATGTGCTTTATAATGCTCAGAGGGAGGGCGGAGCTTTCAACGAGCACTGTGTGGTCGGCGCCGCTTTCAGAAGCAGTGATGTTATCGGATACTTCAATAATCAGGGCTATCATACACCCGCGACAGCGCTCATGCTGGTGGACAACGCTCTCTTCAAGCTCCTAGCCGGACCCAATGCCTCCATCCAGACTGGAAATGACCCCATGCCACGCAATGTGTCCGAGACGGCCCAGAGCCAGCTCTCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100524-'22-23,'22-21,23-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.103
Domain overlap (PFAM):
C1:
NO
A:
PF126982=ABC2_membrane_3=PU(20.4=77.9)
C2:
PF126982=ABC2_membrane_3=FE(21.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGTGGACTCGAGTCTGGAT
R:
GAAGAGAGCGTTGTCCACCAG
Band lengths:
356-666
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]