BtaEX6108008 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014903 | ABCA3
Description
Bos taurus ATP-binding cassette, sub-family A (ABC1), member 3 (ABCA3), mRNA. [Source:RefSeq mRNA;Acc:NM_001113746]
Coordinates
chr25:1805149-1806962:-
Coord C1 exon
chr25:1806776-1806962
Coord A exon
chr25:1805748-1806051
Coord C2 exon
chr25:1805149-1805422
Length
304 bp
Sequences
Splice sites
3' ss Seq
CCCGTCCCCCTCTGTTGCAGCTG
3' ss Score
11.45
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
GGTTGGCAAGCTGGTGGACAGCAGCATGGATATCCAGGCCATCCAGCTCCCTGCCCTGCAGTACCAGCACGAGAGGCGGGCCAGCGACTGGGCCGTGGATGGCCACCTGTGTGGGACCATGGACCCGACCGACGGGGTCGGTGCGCTGATTGAGGAGGAGTGCACTGCCGTTAGGCTCAACACCGGG
Seq A exon
CTGGCCCTCCACTGCCAGCAGTTCTGGGCCATGTTCCTGAAGAAGGCCACCTACAGCTGGCGCGAGTGGAAGGTGGCGGCGGCCCAGGTCCTGGTACCCGTGACGTGCCTCACCCTGGCCCTCCTGGCCATCAACTACTCCTCCGAGATCTTCGACGACCCCCTCCTGAAGCTGACCCTGGGCGAGTACGGCCACACCGTCGTGCCCTTCTCGGTCCCCGGGACCTCTCGGCTGGATCAGCAGCTGTCGGAGCATCTGAAAGACATGCTGCAGGCCGAGGGCCAGGAGCCTCGAGAGGTGCTGG
Seq C2 exon
GTGACCTGGAGGAGTTCCTGATTTTCAGGGCCTCAGTGGAGGGGGGCGGCTTCAACGAGCGGTGCCTGGTGGCAGCGTCCTTCAGAGACACGGGCGAGCGCACGGTCATCACTGCCCTGTTCAACAACCAAGCGTACCACTCCCCAGCCACTGTGCTGGCCGTCGTGGACAACCTCCTGTTCAAGCTGCTGTGTGGCCCCCGGGCCTCCATCACGGTGTCCAACTTCCCCCAGCCCCGGAGCGCCCTACAGGCTGCCAAGGATCAGTTCAATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014903-'21-25,'21-24,23-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.010 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF126982=ABC2_membrane_3=PU(19.7=77.5)
C2:
PF126982=ABC2_membrane_3=FE(22.7=100)

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATATCCAGGCCATCCAGCTCC
R:
CACACAGCAGCTTGAACAGGA
Band lengths:
353-657
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]