MmuEX0002981 @ mm10
Exon Skipping
Gene
ENSMUSG00000024130 | Abca3
Description
ATP-binding cassette, sub-family A (ABC1), member 3 [Source:MGI Symbol;Acc:MGI:1351617]
Coordinates
chr17:24396450-24398608:+
Coord C1 exon
chr17:24396450-24396636
Coord A exon
chr17:24397286-24397589
Coord C2 exon
chr17:24398335-24398608
Length
304 bp
Sequences
Splice sites
3' ss Seq
CTGCCTTCCCTCTGCTGCAGCTT
3' ss Score
10
5' ss Seq
TAGGTAAGG
5' ss Score
9.31
Exon sequences
Seq C1 exon
GGTTGGTAAGCTGGTGGACACCAGCATGGACATTCAAGCCATTCAGCTTCCTGCTCTGCAGTACCAGCATGAGAGGCGGGCAAGCGACTGGGCTTTGGACAGTAACCTGTGTGGGGTGATGGACCCAACGAATGGCATTGGAGCCCTCATAGAGGAAGAGGAAGTTTTGGTCAAGCTCAACACAGGG
Seq A exon
CTTGCCCTCCACTGCCAGCAGTTCTGGGCCATGTTCCTGAAGAAGGCTGCATACAGCTGGCGGGAATGGAAGATGGTGGCAGCTCAGGTCCTGGTCCCCCTGACCTGCCTCACCCTGGCCCTCCTGGCTATCCACTACACCTCAGAGATCTTTGATGACCCTCTCCTGAAGCTAAGCCTGAACGAGTATGGTAGAACGGTTGTGCCCTTCTCGGTCCCAGGCACATCCAGGCTGGCTCAGCAGCTGTCTGAGAATCTAAGGGACATGCTGCAGGCTGAGAGGCAGGAGCCCCGGGAAGTGCTAG
Seq C2 exon
GTGACCTAGAGGAGTTCCTGGTTTTCAGGGCCTCAGTGGAAGGAGGCGGCTTTAATGAGCGGTGCCTAGTAGCAACATCCTTCAAAGACAGAGGAGAGCTGACCGTGGTCACTGCCCTGTTCAACAACCAGGCATACCACTCCCCAGCCACTGCCCTGGCCATCGTGGACAACCTTCTGTTCAAGCTATTGTGTGGCCCTCAGGCCTCCATTGAGATCTCCAACTACCCCCAGCCCCGGAACACCCTGCAGGTCGCCAAGGACCACTTCAATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024130_MULTIEX1-2/4=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.010 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF126982=ABC2_membrane_3=PU(19.7=77.5)
C2:
PF126982=ABC2_membrane_3=FE(22.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAACCTGTGTGGGGTGATGGA
R:
ATTGAAGTGGTCCTTGGCGAC
Band lengths:
357-661
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types