RnoEX6046393 @ rn6
Exon Skipping
Gene
ENSRNOG00000050057 | Abca3
Description
ATP binding cassette subfamily A member 3 [Source:RGD Symbol;Acc:1307174]
Coordinates
chr10:13767446-13769533:+
Coord C1 exon
chr10:13767446-13767632
Coord A exon
chr10:13768280-13768583
Coord C2 exon
chr10:13769260-13769533
Length
304 bp
Sequences
Splice sites
3' ss Seq
CTGCCTCCCCTCTGCTGCAGCTT
3' ss Score
9.63
5' ss Seq
TAGGTAAGG
5' ss Score
9.31
Exon sequences
Seq C1 exon
GGTTGGTAAGCTGGTGGACACCAGCATGGACATTCAAGCCATCCAGCTTCCTGCTCTGCAGTACCAGCATGAGAGGCGGGCAAGCGACTGGGCTCTGGATAGTAACTTGTGTGGGGTGATGGACCCAACGAACGGCATTGGAGCCCTCATAGAGGAAGAAGAAGTTTTGGTCAAGCTCAACACCGGG
Seq A exon
CTTGCCCTCCACTGCCAGCAGTTCTGGGCCATGTTCCTGAAGAAGGCTGCGTACAGCTGGCGGGAATGGAGGATGGTAGCCGCTCAGATCCTGGTCCCCGTGACCTGCCTCACCCTGGCCCTCCTGGCTATCAACTACACCTCAGAGATCTTTGATGACCCTCCCCTGAAGCTAAGCCTGAACGAGTATGGTACAACAGTTGTGCCCTTCTCAGTCCCAGGCACATCCAGGCTGGGCCAGCAGCTGTCTGAGCATCTAAGAGACATGCTGCAGGCTGAGAGGCAGGAGCCCCGTGAAGTGCTAG
Seq C2 exon
GTGACCTAGAGGAGTTCCTGGTTTTCAGGGCCTCAGTGGAAGGGGGCGGCTTTAATGAGAGGTGCCTGGTAGCGACATCCTTCAAAGACAGTGGAGAGCGGACAGTGGTCACTGCCCTGTTCAACAACCAGGCATACCACTCCCCAGCCACTGCCCTGGCCATTGTGGACAACCTTCTGTTCAAGCTTCTGTGTGGCCCTCGGGCCTCCATTGAGATCTCCAACTATCCCCAGCCCCGGAGCACCCTGCAGGTCGCCAAGGACCAGTTCAACGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000050057-'26-33,'26-30,28-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.010 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF126982=ABC2_membrane_3=PU(19.7=77.5)
C2:
PF126982=ABC2_membrane_3=FE(22.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGACACCAGCATGGACATT
R:
GAAGGTTGTCCACAATGGCCA
Band lengths:
351-655
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]