MmuEX1003806 @ mm10
Exon Skipping
Gene
ENSMUSG00000032826 | Ank2
Description
ankyrin 2, brain [Source:MGI Symbol;Acc:MGI:88025]
Coordinates
chr3:126964938-126971038:-
Coord C1 exon
chr3:126971003-126971038
Coord A exon
chr3:126966123-126966146
Coord C2 exon
chr3:126964938-126965162
Length
24 bp
Sequences
Splice sites
3' ss Seq
TAATTTTTTTGCTCCTGTAGGAG
3' ss Score
8.87
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
CCGCTCCTCTCCATGTCTCGATCGTGACAACAGCAG
Seq A exon
GAGGTGCCTGCTCAAGAGACCTTG
Seq C2 exon
TTTCCTAGTCAGTTTTATGGTGGATGCCCGTGGTGGTGCCATGCGAGGATGCAGACACAATGGACTCAGAATCATTATCCCACCTCGGAAATGCACAGCCCCAACTCGCGTCACCTGCCGCCTTGTGAAACGCCATCGACTGGCAACAATGCCGCCCATGGTGGAAGGAGAAGGCCTGGCCAGCCGCCTGATTGAAGTCGGACCTTCGGGAGCTCAGTTTCTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032826-'83-90,'83-89,84-90
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.192 A=0.000 C2=0.009
Domain overlap (PFAM):
C1:
PF0079115=ZU5=PU(1.3=7.7)
A:
PF0079115=ZU5=PU(1.3=11.1)
C2:
PF0079115=ZU5=FE(89.3=100),PF0079115=ZU5=PU(0.1=0.0)
Main Inclusion Isoform:
ENSMUST00000211813fB5783
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTCGATCGTGACAACAGCA
R:
GTGCATTTCCGAGGTGGGATA
Band lengths:
118-142
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types