RnoEX0009358 @ rn6
Exon Skipping
Gene
ENSRNOG00000011076 | Ank2
Description
ankyrin 2 [Source:RGD Symbol;Acc:620156]
Coordinates
chr2:231269728-231280430:-
Coord C1 exon
chr2:231280327-231280430
Coord A exon
chr2:231270905-231270928
Coord C2 exon
chr2:231269728-231269952
Length
24 bp
Sequences
Splice sites
3' ss Seq
TAATTTTTTTGCTCCTATAGGAG
3' ss Score
8.84
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
GTGTCAGCCCTAGCCAAGGAGGCAGAAAGGAATTCTTATCGTCTGAGCTGGGGCACCGAGAACTTAGACAACGTGGCTCTTTCTTCCAGTCCTATTCATTCAGG
Seq A exon
GAGGTGCCTGCCCAAGAGGCCTTG
Seq C2 exon
TTTCCTAGTCAGTTTTATGGTGGATGCCCGTGGTGGTGCCATGCGAGGGTGCAGACACAATGGGCTCAGAATCATTATCCCACCTCGGAAATGCACAGCCCCGACTCGAGTCACCTGCCGCCTTGTGAAACGCCACAGACTGGCGACGATGCCACCCATGGTGGAAGGAGAAGGCCTGGCCAGCCGCCTGATTGAAGTCGGACCTTCCGGAGCTCAGTTCCTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011076_MULTIEX2-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.086 A=0.000 C2=0.017
Domain overlap (PFAM):
C1:
PF0079115=ZU5=PU(1.0=2.9)
A:
PF0079115=ZU5=PU(1.2=11.1)
C2:
PF0079115=ZU5=FE(89.3=100),PF0079115=ZU5=PU(0.1=0.0)
Main Inclusion Isoform:
ENSRNOT00000080637fB1064
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGGCTCTTTCTTCCAGTCC
R:
TTCTGAGCCCATTGTGTCTGC
Band lengths:
104-128
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]