RnoEX0009357 @ rn6
Exon Skipping
Gene
ENSRNOG00000011076 | Ank2
Description
ankyrin 2 [Source:RGD Symbol;Acc:620156]
Coordinates
chr2:231269728-231280430:-
Coord C1 exon
chr2:231280327-231280430
Coord A exon
chr2:231275847-231275882
Coord C2 exon
chr2:231269728-231269952
Length
36 bp
Sequences
Splice sites
3' ss Seq
AAGTATCTATTCTGTTGCAGCCG
3' ss Score
7.26
5' ss Seq
CAGGTGAAC
5' ss Score
5.56
Exon sequences
Seq C1 exon
GTGTCAGCCCTAGCCAAGGAGGCAGAAAGGAATTCTTATCGTCTGAGCTGGGGCACCGAGAACTTAGACAACGTGGCTCTTTCTTCCAGTCCTATTCATTCAGG
Seq A exon
CCGCGCCTCTCCATGTCTTGACCGTGACAACAGCAG
Seq C2 exon
TTTCCTAGTCAGTTTTATGGTGGATGCCCGTGGTGGTGCCATGCGAGGGTGCAGACACAATGGGCTCAGAATCATTATCCCACCTCGGAAATGCACAGCCCCGACTCGAGTCACCTGCCGCCTTGTGAAACGCCACAGACTGGCGACGATGCCACCCATGGTGGAAGGAGAAGGCCTGGCCAGCCGCCTGATTGAAGTCGGACCTTCCGGAGCTCAGTTCCTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011076_MULTIEX2-1/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.086 A=0.231 C2=0.017
Domain overlap (PFAM):
C1:
PF0079115=ZU5=PU(1.0=2.9)
A:
PF0079115=ZU5=PU(1.2=7.7)
C2:
PF0079115=ZU5=FE(89.3=100),PF0079115=ZU5=PU(0.1=0.0)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCACCGAGAACTTAGACAA
R:
TTCTGAGCCCATTGTGTCTGC
Band lengths:
125-161
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]