DreEX0013091 @ danRer10
Exon Skipping
Gene
ENSDARG00000043313 | ank2b
Description
ankyrin 2b, neuronal [Source:ZFIN;Acc:ZDB-GENE-041010-165]
Coordinates
chr7:57646539-57650296:-
Coord C1 exon
chr7:57650205-57650296
Coord A exon
chr7:57649863-57649898
Coord C2 exon
chr7:57646539-57646763
Length
36 bp
Sequences
Splice sites
3' ss Seq
TGATGGATTTTGGTCTTCAGCCA
3' ss Score
4.35
5' ss Seq
CAGGTGACT
5' ss Score
6.6
Exon sequences
Seq C1 exon
GTGTCTTCTCTTGGAAGAGAAAATGAAAAGGACTCATGGGAAACTGAAAACTTGGACAACATAGCACTTTCCTCAAGTCCTGCTCATTCTGG
Seq A exon
CCATTGTTCTCCATGTCATGATCATGACAATAGCAG
Seq C2 exon
TTTCTTAGTCAGCTTCATGGTGGATGCTCGAGGAGGTGCCATGCGAGGATGCCGCCACAATGGTCTGCGGCTGATCATTCCACCACGGAAGTGCAGCGCCCCTACTAGAGTCACCTGTAGACTGGTCAAAAGGCACCGACTGGCAACAATGCCTCCAATGGTAGAAGGTGACGGTCTAGCCAGCAGGCTGATTGAGGTCGGACCTTCTGGAGCTCAGTTCCTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000043313_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.565 A=0.385 C2=0.053
Domain overlap (PFAM):
C1:
PF0079115=ZU5=PU(1.2=3.2)
A:
PF0079115=ZU5=PU(1.2=7.7)
C2:
PF0079115=ZU5=FE(89.3=100),PF0079115=ZU5=PU(0.1=0.0)
Main Inclusion Isoform:
ENSDART00000147287fB1175
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACTTTCCTCAAGTCCTGCT
R:
GTGGAATGATCAGCCGCAGAC
Band lengths:
112-148
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]