GgaEX0018075 @ galGal3
Exon Skipping
Gene
ENSGALG00000012044 | Q90716_CHICK
Description
NA
Coordinates
chr4:58331409-58343477:-
Coord C1 exon
chr4:58343374-58343477
Coord A exon
chr4:58338925-58338960
Coord C2 exon
chr4:58331409-58331633
Length
36 bp
Sequences
Splice sites
3' ss Seq
AATCATCTATTCTGTTGCAGATG
3' ss Score
10.42
5' ss Seq
CAGGTGAAC
5' ss Score
5.56
Exon sequences
Seq C1 exon
GTAACTACTCTGGCCAAAGAAGCAGAAAGGAATTCATATCGCTTAAGCTGGGGGCCTGAAAACTTGGACAATGTGGCTCTTTCTTCCAGCCCTATTCACTCAGG
Seq A exon
ATGCTCTTCTCCATGTCTTGATCATGACAACAGCAG
Seq C2 exon
CTTCCTAGTTAGTTTCATGGTGGATGCTCGTGGGGGTGCCATGAGAGGCTGCAGACATAACGGACTGCGGATTATTATTCCTCCACGGAAATGCACTGCTCCAACACGAGTGACTTGCCGCTTGGTGAAACGTCACAGACTGGCCACCATGCCTCCCATGGTGGAAGGAGAAGGCCTGGCCAGCCGTCTGATCGAAGTGGGACCATCTGGGGCCCAGTTTCTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012044-'36-44,'36-42,38-44
Average complexity
C1
Mappability confidence:
100%=80=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.083 A=0.000 C2=0.001
Domain overlap (PFAM):
C1:
PF0079115=ZU5=PU(1.0=2.9)
A:
PF0079115=ZU5=PU(1.0=7.7)
C2:
PF0079115=ZU5=FE(89.3=100),PF0079115=ZU5=PU(0.1=0.0)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGCCTGAAAACTTGGACAA
R:
GTCCGTTATGTCTGCAGCCTC
Band lengths:
119-155
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]