BtaEX0003408 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002392 | ANK2
Description
ankyrin 2, neuronal [Source:HGNC Symbol;Acc:HGNC:493]
Coordinates
chr6:13433477-13447928:-
Coord C1 exon
chr6:13447825-13447928
Coord A exon
chr6:13440198-13440233
Coord C2 exon
chr6:13433477-13433701
Length
36 bp
Sequences
Splice sites
3' ss Seq
AAGTATCTATTCTGTTGCAGCCG
3' ss Score
7.26
5' ss Seq
CAGGTGAAC
5' ss Score
5.56
Exon sequences
Seq C1 exon
GTGACAACTCTAGCCAAGGAGGCAGAAAGGAATTCTTATCGTCTAAGCTGGGGCACTGAGAACTTGGACAACGTGGCTCTTTCTTCCAGCCCTATTCATTCAGG
Seq A exon
CCGCACCTCTCCATGTCTTGATCGTGACAACAGCAG
Seq C2 exon
TTTCCTGGTTAGTTTTATGGTGGATGCCCGAGGTGGTGCTATGCGAGGATGCAGACACAACGGGCTCCGCATCATTATTCCGCCCCGGAAATGTACCGCCCCAACACGAGTCACCTGCCGACTGGTCAAACGCCATAGACTGGCGACAATGCCTCCAATGGTGGAAGGAGAGGGCCTGGCCAGTCGCCTGATTGAAGTTGGACCTTCTGGTGCTCAGTTCCTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002392_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.098 A=0.231 C2=0.002
Domain overlap (PFAM):
C1:
PF0079115=ZU5=PU(1.0=2.9)
A:
PF0079115=ZU5=PU(1.0=7.7)
C2:
PF0079115=ZU5=FE(89.3=100),PF0079115=ZU5=PU(0.1=0.0)
Main Inclusion Isoform:
ENSBTAT00000063504fB553
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAGCTGGGGCACTGAGAACT
R:
GTTGTGTCTGCATCCTCGCAT
Band lengths:
122-158
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development