MmuEX1004734 @ mm10
Exon Skipping
Gene
ENSMUSG00000021983 | Atp8a2
Description
ATPase, aminophospholipid transporter-like, class I, type 8A, member 2 [Source:MGI Symbol;Acc:MGI:1354710]
Coordinates
chr14:60186620-60197179:-
Coord C1 exon
chr14:60196986-60197179
Coord A exon
chr14:60186850-60186874
Coord C2 exon
chr14:60186620-60186751
Length
25 bp
Sequences
Splice sites
3' ss Seq
AGCTGATCTCCCAAATGCAGGGA
3' ss Score
5.52
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GACTCCAACAGTTGCTTGCCAAGAGGATGGATGTGTGATCTGAGCGTCTGGGCACCGTCTCAATTTGAGACAGGTTCCTGAGAGTGAAGAAAAACCATGGGCTCAAAATAGAAGTCGAAAGAGAGGAGCTTGTAGGCTCGAAAGAAACAGCAGTACACTACTCTACCCTGGGAAAGCCTCAATGAAGCTTCAGG
Seq A exon
GGAAAGCAGAGCTCAGGCAGGAGAG
Seq C2 exon
GTTAAAGGAGAAAACTTACTCCCTGTGGCCCTTTCTTTTGGGTGACAAAAAGAAGTACTTAAATCTTCTCTACAGTTCCAAATCTCAGAGACTGATAGTCTTGGAGCCAAATACAGCCTCTTTCAATTTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021983-'0-2,'0-1,1-2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.533 A=0.333 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Inclusion Isoform:
ENSMUST00000131670fB6424
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAAAGAGAGGAGCTTGTAGGC
R:
AAGGGCCACAGGGAGTAAGTT
Band lengths:
112-137
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types