MmuEX6041873 @ mm10
Exon Skipping
Gene
ENSMUSG00000021983 | Atp8a2
Description
ATPase, aminophospholipid transporter-like, class I, type 8A, member 2 [Source:MGI Symbol;Acc:MGI:1354710]
Coordinates
chr14:60186217-60197143:-
Coord C1 exon
chr14:60196986-60197143
Coord A exon
chr14:60186620-60186751
Coord C2 exon
chr14:60186217-60186325
Length
132 bp
Sequences
Splice sites
3' ss Seq
TTGTGTGCTTATTCCCTAAGGTT
3' ss Score
7.3
5' ss Seq
TAAGTAAGT
5' ss Score
8.07
Exon sequences
Seq C1 exon
GATCTGAGCGTCTGGGCACCGTCTCAATTTGAGACAGGTTCCTGAGAGTGAAGAAAAACCATGGGCTCAAAATAGAAGTCGAAAGAGAGGAGCTTGTAGGCTCGAAAGAAACAGCAGTACACTACTCTACCCTGGGAAAGCCTCAATGAAGCTTCAGG
Seq A exon
GTTAAAGGAGAAAACTTACTCCCTGTGGCCCTTTCTTTTGGGTGACAAAAAGAAGTACTTAAATCTTCTCTACAGTTCCAAATCTCAGAGACTGATAGTCTTGGAGCCAAATACAGCCTCTTTCAATTTTAA
Seq C2 exon
CTGTAGAATCAAAAACACTTGCACTGTGAATCATGTGATCTACAAGAAGCACAGAGAGCATCCATCACTTTGAAGAGTCATGTTAATTCCTCAAGAAAAGATAAATCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021983-'1-3,'1-2,3-3=AN
Average complexity
A_C3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.533 A=1.000 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGGCGGGAGATGGAGACTT
R:
CACATGATTCACAGTGCAAGTGT
Band lengths:
249-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types