MmuEX6041873 @ mm9
Exon Skipping
Gene
ENSMUSG00000021983 | Atp8a2
Description
ATPase, aminophospholipid transporter-like, class I, type 8A, member 2 [Source:MGI Symbol;Acc:MGI:1354710]
Coordinates
chr14:60805054-60815980:-
Coord C1 exon
chr14:60815823-60815980
Coord A exon
chr14:60805457-60805588
Coord C2 exon
chr14:60805054-60805162
Length
132 bp
Sequences
Splice sites
3' ss Seq
TTGTGTGCTTATTCCCTAAGGTT
3' ss Score
7.3
5' ss Seq
TAAGTAAGT
5' ss Score
8.07
Exon sequences
Seq C1 exon
GATCTGAGCGTCTGGGCACCGTCTCAATTTGAGACAGGTTCCTGAGAGTGAAGAAAAACCATGGGCTCAAAATAGAAGTCGAAAGAGAGGAGCTTGTAGGCTCGAAAGAAACAGCAGTACACTACTCTACCCTGGGAAAGCCTCAATGAAGCTTCAGG
Seq A exon
GTTAAAGGAGAAAACTTACTCCCTGTGGCCCTTTCTTTTGGGTGACAAAAAGAAGTACTTAAATCTTCTCTACAGTTCCAAATCTCAGAGACTGATAGTCTTGGAGCCAAATACAGCCTCTTTCAATTTTAA
Seq C2 exon
CTGTAGAATCAAAAACACTTGCACTGTGAATCATGTGATCTACAAGAAGCACAGAGAGCATCCATCACTTTGAAGAGTCATGTTAATTCCTCAAGAAAAGATAAATCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021983-'1-2,'1-1,2-2=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=1.000 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGCAGGGAAAGCAGAGCTC
R:
TCTTTTCTTGAGGAATTAACATGACT
Band lengths:
202-334
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: