GgaEX1037495 @ galGal4
Exon Skipping
Gene
ENSGALG00000017112 | MTMR6
Description
myotubularin related protein 6 [Source:HGNC Symbol;Acc:HGNC:7453]
Coordinates
chr1:176358545-176359729:+
Coord C1 exon
chr1:176358545-176358745
Coord A exon
chr1:176359392-176359526
Coord C2 exon
chr1:176359603-176359729
Length
135 bp
Sequences
Splice sites
3' ss Seq
TGATCTCTTGTTGCCTTAAGGTT
3' ss Score
7.63
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
GTGCTGTCAGTTGGATGGTGATCCAAAAGAGATCTCGCCAGTGTTCACTCAGTTTTTAGAGAGTGTGTGGAATCTGACTGAGCAGTTCCCACAAGCCTTTGAGTATAATGAAGCTTTCCTCCTTCAGATCCATGAACATGTCCACTCGTGCCAGTTTGGGAACTTCCTTGGAAACTGCCAAAAAGAACGAGAAGAACTGAA
Seq A exon
GTTAAAAGAGAAGACATATTCCCTGTGGCCTTTCCTTCTAGATGAACAAAAGAAATACCAGAATCCTCTGTATAATCCAAGTTTTTCTCCGAATCTAACTCTTTTGGAGCCTAATACTGTGTCATTCAATTTCAA
Seq C2 exon
GTTTTGGAGAAATATGTACCATCAGTTTGACCGAAGCATGCATCCCAGGCAGTCTGTGTATGATCTTATCATGGACATGAGTGAACAAAATAAACAACTGGAGGAAGACATTAAACAACTGGAAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017112-'22-20,'22-19,23-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.186
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=PD(19.2=97.1),PF097894=DUF2353=PU(12.0=25.0)
A:
PF097894=DUF2353=FE(31.7=100)
C2:
PF097894=DUF2353=FE(29.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCTGTCAGTTGGATGGTGA
R:
TGCATGCTTCGGTCAAACTGA
Band lengths:
243-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]