BtaEX6056542 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003116 | MTMR6
Description
myotubularin related protein 6 [Source:HGNC Symbol;Acc:HGNC:7453]
Coordinates
chr12:34193307-34194253:+
Coord C1 exon
chr12:34193307-34193507
Coord A exon
chr12:34193894-34194025
Coord C2 exon
chr12:34194127-34194253
Length
132 bp
Sequences
Splice sites
3' ss Seq
TGTTTTTCTCATCACATCAGGTT
3' ss Score
8.5
5' ss Seq
TAAGTAAGG
5' ss Score
5.07
Exon sequences
Seq C1 exon
GTGTGGCCATTTGGATGGTGACCCAAAGGAAGTCTCGCCGGTGTTTACTCAGTTCTTGGAGTGTGTGTGGCATTTGACCGAACAGTTTCCACAAGCCTTCGAGTTCAATGAAGCGTTTCTTCTTCAGATCCATGAACATATCCATTCATGCCAGTTTGGAAACTTTATTGGGAATTGTCAGAAGGAAAGAGAAGAACTCAA
Seq A exon
GTTGAAGGAGAAGACATACTCCCTGTGGCCGTTTCTTCTGGACGACCAGAAGAAGTACCTCAATCCTCTCTACAGTTCCCAGTCTCAGAAATCGGCAGTTCTGGAGCCAAATACAGTGTCTTTCAATTTTAA
Seq C2 exon
GTTTTGGAGAAACATGTACCACCAGTTTGATCGAACATTGCATCCTAGGCAGTCTGTATTTAATATAATTATGAACATGAATGAGCAGAATAAGCAGTTAGAGAAAGATATCAAGGACTTAGAATCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003116-'19-14,'19-13,20-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.047
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=PD(19.2=97.1)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGACCCAAAGGAAGTCTCG
R:
ACAGACTGCCTAGGATGCAATG
Band lengths:
242-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]