DreEX6010252 @ danRer10
Exon Skipping
Gene
ENSDARG00000008592 | mtmr8
Description
myotubularin related protein 8 [Source:ZFIN;Acc:ZDB-GENE-040426-1016]
Coordinates
chr5:21528478-21529272:-
Coord C1 exon
chr5:21529072-21529272
Coord A exon
chr5:21528845-21528973
Coord C2 exon
chr5:21528478-21528604
Length
129 bp
Sequences
Splice sites
3' ss Seq
CATTTTGTGTGTAATTTTAGGTT
3' ss Score
8.9
5' ss Seq
CAAGTACGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
GTGTGGCCATCTGGACAGCGACCCAAAGGAAGCGTCTCCGGTGTTCACCCAGTTCCTGGAGTGCGTCTGGCAGCTGTCACAACAATTCCCCTGTGTGTTTGAGTTCAACGAACATTACCTGATAGAAATACATGACCAAGTCTACGCCTGCCAGTACGGAAACTTCATCGGCAACTGTCAGAAGGAGAGGCTAGACATGAG
Seq A exon
GTTGCATGAAAAAACCTTTTCCCTGTGGCCGCATCTTCTGGAAAACCAGCATCAGTATCGAAACCCTTTGTACCGGCGCTCATTAGAAAGCACAGTTCTCAGACCAAGCACTTTACCACTACACTTCAA
Seq C2 exon
GTTCTGGTGTGGGATGTATAACCACTATGACAGAGGAATGCACCCAAAACAGTCTGTTCTAGACACGCTGCTGACTCTCACACAGAGGCAGGTAGAAGGAGAGAGAACCATGACTGAATTACAGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000008592-'19-16,'19-15,20-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.465
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=PD(19.2=97.1)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCCGGTGTTCACCCAGTTC
R:
TGAGAGTCAGCAGCGTGTCTA
Band lengths:
247-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]