DreEX0047904 @ danRer10
Exon Skipping
Gene
ENSDARG00000016794 | mtmr6
Description
myotubularin related protein 6 [Source:ZFIN;Acc:ZDB-GENE-030131-5557]
Coordinates
chr24:24907492-24909828:+
Coord C1 exon
chr24:24907492-24907692
Coord A exon
chr24:24907759-24907893
Coord C2 exon
chr24:24909702-24909828
Length
135 bp
Sequences
Splice sites
3' ss Seq
TCATTTGAGTATGATTGCAGGTT
3' ss Score
0.95
5' ss Seq
CAAGTATGG
5' ss Score
4.99
Exon sequences
Seq C1 exon
GTGTGATCAGCTGGACCCTGATCCTAAAGAAGTATCCCCCATCTTCACACAATTCCTTGAGTGTGTTTGGCAGCTGACGGAACAGTTTCCTCAGGCTTTTGAGTTTAGCGAGTGGTTTCTCATTCAGATCCACGAGCATATCCATTCCTGCCAGTTTGGCAACTTCCTGGGTAACAGCCAGCGGCAGAGGGAAGACCTTCA
Seq A exon
GTTGAAGGAGAGGACGTATTCATTGTGGGCTCACCTTCTGAGTGAAAAGCAGAACTACTTGAACCCCGTGTACAGCCCAAGCTTTGCAGAATCACAACCCGTTTTGGAACCATCCACTCAGGCCTACCACTTCAA
Seq C2 exon
GTTCTGGAGGAACATGTACCATCAGTATGACCGCTCCCTGCACCCTCGGCAGTCCATTCTCAAAAACGTTCTCACCTTGAAGGAAAGCAACCGAGAGCTCGAGGGCACAGTTCAAGCCCTGAAGACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016794-'11-15,'11-13,12-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.105
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=PD(19.2=97.1)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGAGTGTGTTTGGCAGCTGA
R:
GCTCTCGGTTGCTTTCCTTCA
Band lengths:
243-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]