MmuEX1006893 @ mm10
Exon Skipping
Gene
ENSMUSG00000033392 | Clasp2
Description
CLIP associating protein 2 [Source:MGI Symbol;Acc:MGI:1923749]
Coordinates
chr9:113770197-113771858:+
Coord C1 exon
chr9:113770197-113770288
Coord A exon
chr9:113771534-113771597
Coord C2 exon
chr9:113771783-113771858
Length
64 bp
Sequences
Splice sites
3' ss Seq
TGTCCATGCTTTCTGTACAGAGA
3' ss Score
8.15
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
TACATCTGGGAGCAGCTAGCTTCTGGCTTCAAGCACAAGAACTTTCGATCTCGAGAAGGCGTGTGCCTGTGTCTTATTGAGACCTTGAACAT
Seq A exon
AGATAAGAAGAAAGGCTAGTCGGTAGTGTTCAGCACCTTCAATCCCAGCATGAGGCAGAGGCAG
Seq C2 exon
CTTTGGGACTCAACCACTGGTCATCAGCAAGTTGGTGCCGCATTTATGTGTCTTATTTGGAGACTCTAACAGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033392-'7-7,'7-6,8-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=0.333 C2=0.000
Domain overlap (PFAM):
C1:
PF123483=CLASP_N=FE(18.2=100)
A:
PF123483=CLASP_N=PD(3.5=57.1)
C2:
PF123483=CLASP_N=FE(15.2=100)
Main Inclusion Isoform:
ENSMUST00000213663fB7792
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACATCTGGGAGCAGCTAGC
R:
AGACACATAAATGCGGCACCA
Band lengths:
145-209
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types