RnoEX0021491 @ rn6
Exon Skipping
Gene
ENSRNOG00000009161 | Clasp2
Description
cytoplasmic linker associated protein 2 [Source:RGD Symbol;Acc:619789]
Coordinates
chr8:122034689-122036302:+
Coord C1 exon
chr8:122034689-122034780
Coord A exon
chr8:122035958-122036042
Coord C2 exon
chr8:122036227-122036302
Length
85 bp
Sequences
Splice sites
3' ss Seq
TTCTCATCTTTCCTTAACAGTCT
3' ss Score
9.73
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
TACATCTGGGAGCAGCTGGCCTCTGGCTTCAAGCACAAGAACTTTCGATCTCGTGAAGGCGTGTGCCTGTGTCTTATTGAAACCTTGAATAT
Seq A exon
TCTGTGTCCATGCTTCCCGCATAGAGATAAGAAGAAAGGCTGGTCGGTGTCCAACACCTTCAATCCCACTATGAGGTAGAGGCAG
Seq C2 exon
GTTTGGGACTCAACCACTGGTCATCAGCAAGTTGGTGCCGCATTTGTGTGTCTTATTTGGAGATTCTAACAGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009161-'6-6,'6-5,7-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF123483=CLASP_N=FE(18.4=100)
A:
PF123483=CLASP_N=PD(9.9=44.4)
C2:
PF123483=CLASP_N=FE(15.3=100)
Main Inclusion Isoform:
ENSRNOT00000091980fB3152
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACATCTGGGAGCAGCTGGC
R:
GTTAGAATCTCCAAATAAGACACACA
Band lengths:
162-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]