MmuEX1007493 @ mm10
Exon Skipping
Gene
ENSMUSG00000063681 | Crb1
Description
crumbs family member 1, photoreceptor morphogenesis associated [Source:MGI Symbol;Acc:MGI:2136343]
Coordinates
chr1:139234727-139237728:-
Coord C1 exon
chr1:139236822-139237728
Coord A exon
chr1:139236135-139236322
Coord C2 exon
chr1:139234727-139234855
Length
188 bp
Sequences
Splice sites
3' ss Seq
TAATGAATACTATATTCCAGGAC
3' ss Score
4.88
5' ss Seq
CAGGTTATT
5' ss Score
3.49
Exon sequences
Seq C1 exon
GACCAATCTGTTGACAATCCGAAAGGCCTGCAGGGCTGTCTGAGCACAATAGAGATTGGAGGCATATATCTTTCTTACTTTGAAAATCTACATGGTTTCCCTGGTAAGCCTCAGGAAGAGCAATTTCTCAAAGTTTCTACAAATATGGTACTTACTGGCTGTTTGCCATCAAATGCCTGCCACTCCAGCCCCTGTTTGCATGGAGGAAACTGTGAAGACAGCTACAGTTCTTATCGGTGTGCCTGTCTCTCGGGATGGTCAGGGACACACTGTGAAATCAACATTGATGAGTGCTTTTCTAGCCCCTGTATCCATGGCAACTGCTCTGATGGAGTTGCAGCCTACCACTGCAGGTGTGAGCCTGGATACACCGGTGTGAACTGTGAGGTGGATGTAGACAATTGCAAGAGTCATCAGTGTGCAAATGGGGCCACCTGTGTTCCTGAAGCTCATGGCTACTCTTGTCTCTGCTTTGGAAATTTTACCGGGAGATTTTGCAG
Seq A exon
GACATGGGCAAGAATACCCGGAGTGGAGTAAATTGGCTGCCTGTAAACATCACTTTTATTCAGAGGCAGAGCATCTTGGCAGACATTATGTGCAGCCATGCCTGTGAGAAATTGTGTTCATCTTCCGCAGCATCTAATATTGTTCAGACCGTCAATGCAAGACACAGTGAGAAATGCTAAGTGTTCAG
Seq C2 exon
ACACAGCAGATTACCCTCAACAGTCTGTGGGAATGAGAAGAGAAACTTCACTTGCTACAATGGAGGCAGCTGCTCCATGTTCCAGGAGGACTGGCAATGTATGTGCTGGCCAGGTTTCACTGGAGAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063681_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0221019=Laminin_G_2=WD(100=41.6),PF0000822=EGF=WD(100=10.2),PF0000822=EGF=WD(100=9.9),PF0000822=EGF=WD(100=10.2)
A:
NO
C2:
PF0000822=EGF=WD(100=70.5)
Main Inclusion Isoform:
ENSMUST00000059825fB8210
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGGAGTTGCAGCCTACCAC
R:
GCTGCCTCCATTGTAGCAAGT
Band lengths:
243-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types