RnoEX0024401 @ rn6
Exon Skipping
Gene
ENSRNOG00000010903 | Crb1
Description
crumbs 1, cell polarity complex component [Source:RGD Symbol;Acc:1309947]
Coordinates
chr13:56311112-56314160:-
Coord C1 exon
chr13:56313254-56314160
Coord A exon
chr13:56312544-56312667
Coord C2 exon
chr13:56311112-56311240
Length
124 bp
Sequences
Splice sites
3' ss Seq
AGCATCACTTTAATCCACAGGTA
3' ss Score
8.23
5' ss Seq
CAGGTGATT
5' ss Score
5.95
Exon sequences
Seq C1 exon
GACCAAGCTGTTGACAATCAGAAAGGCCTGCAGGGCTGTCTGAGCACAGTACAGATAGGAGGGCTATATCTCTCTTACTTTGAAAGTCTTCATGGTTTCACTAGTAAGCCCCAAGAAGAGCAGTTTCTCAAAGTTTCTACAAATGTGGCACTTACTGGCTGTTTGCCACTCAGTGCCTGCCACTCTAGCCCCTGTCTGCATGGAGGAATTTGCGAAGACAGCTACAGCTCTTATCGGTGTGCCTGTCTCCCGGGATGGTCGGGGGCACACTGCGAAATCAACGTTGATGAGTGCTCCTCCAGCCCCTGTGTCCATGGCAACTGCTCGGACGGGGTTGCAGCCTACCACTGCAGGTGTGAGCCTGGCTATACTGGTGGGAACTGTGAAGCGGAGGTAGACACTTGCAAGAGTCATCAGTGTGCCAATGGGGCCACCTGCGTCAGTGGCGCTCAGGGCTACTCTTGCCTCTGTCTTGGAAATTTTACCGGCAGATTTTGCAG
Seq A exon
GTAGAGCATTTTGGCACACATTACATGCAGCCGTGCCTGGGAGAAGCTGTGTTCATCTTCTGCAGCATCTAATATTGTGCAGAGCTTCAGTGGCAAGGCACAGTGAGAAGTCCTAAGTGTTCAG
Seq C2 exon
ACACAGCAGATTACCCTCAACAGTCTGTGGGAACGAGAAGACAAACTTCACTTGCTACAACGGAGGCAGCTGCTCCGTGTTCCAGGAGGACTGGAAATGTGTGTGCCGGCCAGGTTTCACTGGAGAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010903-'15-17,'15-16,16-17
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0221019=Laminin_G_2=WD(100=41.6),PF0000822=EGF=WD(100=10.2),PF0000822=EGF=WD(100=9.9),PF0000822=EGF=WD(100=10.2)
A:
NO
C2:
PF0000822=EGF=WD(100=70.5)
Main Inclusion Isoform:
ENSRNOT00000032122fB3567
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTTGATGAGTGCTCCTCCAG
R:
TTCCCACAGACTGTTGAGGGT
Band lengths:
252-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]