MmuEX1007659 @ mm10
Exon Skipping
Gene
ENSMUSG00000044647 | Csrnp3
Description
cysteine-serine-rich nuclear protein 3 [Source:MGI Symbol;Acc:MGI:1925021]
Coordinates
chr2:65877965-65949129:+
Coord C1 exon
chr2:65877965-65878052
Coord A exon
chr2:65930048-65930390
Coord C2 exon
chr2:65948959-65949129
Length
343 bp
Sequences
Splice sites
3' ss Seq
TGTTTTCTTCCTTCTCGTAGAGT
3' ss Score
10.15
5' ss Seq
CAGGTCGGT
5' ss Score
7.53
Exon sequences
Seq C1 exon
GAAAAAATAAGAGGATATCAAGAGGCTGAAAGAATATTTTCAGAAGCATAGACTCTTCGGAGGATACTGCAGTTCATGAGATCTCAAG
Seq A exon
AGTCAGCTGATAAAAATATCCATAGACACAGTGAAGTCAGAAGCAAGGCTGGCTTGCTCAGACAGAGCTCCATGTGATCACATATAGGCAGCCTGGCTGAGGCTGATGCCGTGCAGCAAGCAGTAGGTAATGAGTCTTTGTGCGAGGGAAGCTCTTGTCTCGGAACAATAAAGCATATGGTACCAGCAATAAAACACGGGGCCGGGAAATGTAAGAAGATTCCACTGAACCAGGAAGAACGATGCCTTCCGTGATGCTGACACATACTGTAAAATGATAATCAATTTATTTTGGATTCTAATGAATAAAGACTGCCAGGACTCGACTACAGCTGTTTGAACAG
Seq C2 exon
GTACATGTGACAACGCCGCAGCTATGAGTGGAATTTTAAAGAGGAAGTTCGAAGATGTGGACGCCTCCTCACCATGCTCCTCTGCTCGGGAATCGGATGATGAAGTCTCCAGCAGCGAAAGTGCTGACAGCGGGGATAGCGTCAATCCATCCACCTCAAATCACTTCACCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044647_MULTIEX1-2/4=C1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.857 A=1.000 C2=0.748
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSMUST00000122912fB8307
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATAAGAGGATATCAAGAGGCTGAA
R:
GGGTGAAGTGATTTGAGGTGGA
Band lengths:
254-597
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types