RnoEX0024992 @ rn6
Exon Skipping
Gene
ENSRNOG00000005359 | Csrnp3
Description
cysteine and serine rich nuclear protein 3 [Source:RGD Symbol;Acc:1306214]
Coordinates
chr3:51918788-51992681:+
Coord C1 exon
chr3:51918788-51918875
Coord A exon
chr3:51976314-51976655
Coord C2 exon
chr3:51992581-51992681
Length
342 bp
Sequences
Splice sites
3' ss Seq
CTATTTCTTCCTCCTTGTAGAGT
3' ss Score
10.08
5' ss Seq
CAGGTCGGT
5' ss Score
7.53
Exon sequences
Seq C1 exon
GAAAAAATAAAAGGATATCAGCAGCCTGAAAGGATATTCTCAGAAGCATAGACTCTTCGGAGGATACTGAACTTCATGAGATCTCACG
Seq A exon
AGTCAGCTGATAAAAATATCCGTAGACACAGTGAAGTCAGCGGTAAGCCTGGCTTTCTCAGACAGAACTCCATGTGATCACACATAGGCAGCCCGGCTGAGCTGATGCCGTGCAGCAAGCAGTAGGTAATGAGTCTTTGTGCGAGCGAAGCTCTTGTCTCGGAACAATAAAGCATATGGTACCAGCAATAAAACACGGGGCCGGGAAACGTAAGAAGATTCCACTGAACCAGGAAGAACGACGCCTTCCGTGATGCCGACACGTACTGTAAAATGATAATCAATTTATTTTGGATTCTAATGAATAAAGACTGCCAGGACTCGACTCCAGCTGTTTGAACAG
Seq C2 exon
GAAAGCTGGTCTCTCAACCAGTTCCACAAGTCTGTGTGGTGCCTGCACTGCTCCATGAAGCAACACCCTCTGTGTATTGTCCAGCTGAGGCTCTCTCGATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005359-'2-6,'2-5,3-6
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.667 A=1.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000007197fB3667
Main Skipping Isoform:
ENSRNOT00000007197fB3668
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]