MmuEX1007953 @ mm10
Exon Skipping
Gene
ENSMUSG00000063929 | Cyp4a32
Description
cytochrome P450, family 4, subfamily a, polypeptide 32 [Source:MGI Symbol;Acc:MGI:3717148]
Coordinates
chr4:115611217-115614677:+
Coord C1 exon
chr4:115611217-115611407
Coord A exon
chr4:115611504-115611637
Coord C2 exon
chr4:115614613-115614677
Length
134 bp
Sequences
Splice sites
3' ss Seq
AAGGATGGACTTTATTTCAGGGA
3' ss Score
4.1
5' ss Seq
AAGGTATGA
5' ss Score
9.11
Exon sequences
Seq C1 exon
ATGGAGAATGGGGACAGCATGTCTGACAAGGACCTACGTGCTGAGGTGGACACATTCATGTTCGAGGGCCATGACACCACAGCCAGTGGAGTCTCCTGGATCTTCTATGCTCTGGCCACACACCCTGAGCACCAACAGAGATGCAGAGAGGAAGTTCAGAGCCTCCTGGGGGATGGATCCTCTATCACCTG
Seq A exon
GGATCACCTAGACCAGATTCCCTATACCACAATGTGCATCAAGGAGGCCCTAAGGCTCTACCCACCTGTCCCAGGCATTGTCAGAGAACTCAGTACATCTGTCACTTTCCCTGATGGACGCTCTTTACCCAAAG
Seq C2 exon
GTGTCCAGGTCACACTCTCCATTTATGGTCTCCACCACAACCCGAAGGTGTGGCCAAACCCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063929_MULTIEX2-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.094 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.9=100)
A:
PF0006717=p450=FE(9.9=100)
C2:
PF0006717=p450=FE(4.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGACAGCATGTCTGACAAGG
R:
CTGGGTTTGGCCACACCTTC
Band lengths:
244-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types